GenomicsPersonal Genomics

Upload 23andMe Data and Analyze Your Traits (Tutorial)

Step-by-step guide to uploading your 23andMe raw data to SciRouter and exploring your trait analysis, pharmacogenomics, and ancestry results.

Ryan Bethencourt
April 9, 2026
8 min read

What You Will Need

  • A 23andMe or AncestryDNA raw data file (download from your provider's account settings)
  • A free SciRouter account (sign up at scirouter.ai/register)
  • A modern web browser (Chrome, Firefox, Safari, or Edge)
Note
Your raw DNA file is parsed entirely in your browser. It is never uploaded to SciRouter servers. This privacy-first approach means your genetic data stays on your device at all times.

Step 1: Create a Free Account

Go to scirouter.ai/register and sign up with your email or Google account. The free tier gives you full access to the Genomics Hub and 5,000 API calls per month. No credit card required.

Step 2: Navigate to the Genomics Hub

After signing in, click Genomics Hub in the navigation menu or go directly to scirouter.ai/genomics. You will see the welcome screen with a file upload area in the center of the page.

Step 3: Upload Your Raw Data File

Click the upload area or drag and drop your 23andMe .txt file onto it. The file selector accepts .txt and .csv files. Once you select a file, you will see a progress indicator as the browser parses your genotypes. A typical 23andMe v5 file with 640,000 SNPs parses in about 3-5 seconds.

During parsing, the browser reads each line, extracts the rsID and genotype, validates the format, and calculates your call rate. You will see a summary showing the detected chip version, total SNPs, valid SNPs, and call rate percentage.

Step 4: Explore Your Genome Overview

After parsing completes, you land on the Genome Overview dashboard. This is a summary screen showing key statistics about your genome: total SNPs analyzed, how many matched known annotations, and a breakdown by category (traits, pharmacogenomics, health, ancestry, Neanderthal). Each category shows a count and a colored icon. Click any category card to drill into the details.

Step 5: Browse the Trait Explorer

The Trait Explorer page shows your results organized by trait category. Each trait entry displays the SNP rsID, your genotype, the interpretation, the associated gene, and a confidence rating. Traits cover areas like:

  • Physical traits — eye color prediction, hair texture, freckling, earlobe type
  • Taste and smell — bitter taste perception (TAS2R38), cilantro aversion, asparagus smell detection
  • Metabolism — caffeine metabolism speed, alcohol flush reaction, lactose tolerance
  • Performance — muscle fiber composition (ACTN3), endurance vs sprint tendency
  • Sleep — circadian rhythm tendency, light vs deep sleep patterns

Step 6: Check Pharmacogenomics

The Pharmacogenomics section is one of the most practically valuable parts of the analysis. It shows your predicted metabolizer status for key drug-metabolizing enzymes:

  • CYP2D6 — affects codeine, tramadol, tamoxifen, and many antidepressants
  • CYP2C19 — affects clopidogrel (Plavix), PPIs, and some antidepressants
  • VKORC1 — affects warfarin dosing sensitivity
  • DPYD — affects 5-fluorouracil and capecitabine (chemotherapy toxicity risk)

Each entry shows your genotype, the predicted phenotype (poor / intermediate / normal / rapid metabolizer), affected medications, and the clinical implication. These results can be a useful conversation starter with your physician, especially before starting new medications.

Warning
Pharmacogenomics results are for informational purposes only. Always consult your healthcare provider before making any medication decisions based on genetic data. Clinical pharmacogenomic testing uses more comprehensive assays than consumer genotyping chips.

Step 7: Review Health Risk Markers

The Health section displays markers for conditions with established genetic associations. Each marker includes a confidence level based on the strength of evidence: high confidence markers have strong clinical validation, while moderate and preliminary markers indicate associations from population studies that are still being validated.

Step 8: Explore Ancestry and Literature

The Ancestry page shows population-informative markers and your Neanderthal variant count. The Literature Radar matches your specific variants against published research papers, showing which of your genotypes have been studied in recent publications.

The Ask Your Genome chat feature lets you ask questions about your results in plain language. The AI assistant has context about your specific genotypes and can explain what individual results mean.

What Comes Next

Frequently Asked Questions

Is my 23andMe data uploaded to SciRouter servers?

No. Your raw DNA file is parsed entirely in your browser using JavaScript. The file never leaves your device. Only after parsing is complete can you optionally save your results to your account, which stores the interpreted annotations rather than the raw genotype file.

Which 23andMe file formats are supported?

SciRouter supports 23andMe raw data files from chip versions v3, v4, and v5. These are the standard text files you download from 23andMe containing rsID, chromosome, position, and genotype columns. AncestryDNA files are also supported.

How long does the analysis take?

File parsing takes 2-5 seconds in the browser depending on file size and your device speed. The annotation matching runs instantly since the catalog is pre-loaded. The full process from upload to seeing your complete trait report is typically under 10 seconds.

Do I need a paid account to use the Genomics Hub?

No. You can create a free account and access the full Genomics Hub including trait analysis, pharmacogenomics, and ancestry results. The free tier includes 5,000 API calls per month, which is more than enough for personal genomics exploration.

What should I do if I see a health risk marker?

SciRouter provides research-grade annotations, not clinical diagnoses. If you see a health risk marker flagged, consult a genetic counselor or healthcare provider for proper clinical interpretation. Our confidence ratings help distinguish well-established associations from preliminary research findings.

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